Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim47Q8C0E3 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trim47Q8C0E3 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Trim47Q8C0E3 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
Trim47Q8C0E3 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trim47Q8C0E3 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trim47Q8C0E3 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Trim47Q8C0E3 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Gm13823-201ENSMUST00000119930 345 ntBASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Auts2-212ENSMUST00000178555 309 ntBASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Gm27618-201ENSMUST00000183671 60 ntBASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Gm37728-201ENSMUST00000195025 2292 ntBASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trim47Q8C0E3 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Ptprs-211ENSMUST00000223859 5588 ntBASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Gm6539-201ENSMUST00000119157 1064 ntBASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Gm10576-201ENSMUST00000191927 825 ntBASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 mt-Rnr1-201ENSMUST00000082388 955 ntBASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim47Q8C0E3 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16.18■□□□□ 0.18
Trim47Q8C0E3 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.18■□□□□ 0.18
Trim47Q8C0E3 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim47Q8C0E3 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms