Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm21896-201ENSMUST00000186520 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21873-201ENSMUST00000186728 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21794-201ENSMUST00000187056 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21880-201ENSMUST00000187275 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21826-201ENSMUST00000187451 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21198-201ENSMUST00000188393 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21749-201ENSMUST00000189343 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21901-201ENSMUST00000189568 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm29424-201ENSMUST00000189716 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm28599-201ENSMUST00000189838 694 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21867-201ENSMUST00000189917 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm29269-201ENSMUST00000190087 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21722-201ENSMUST00000190153 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm28423-201ENSMUST00000190701 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21899-201ENSMUST00000190745 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21910-201ENSMUST00000191163 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21849-201ENSMUST00000191571 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm28678-201ENSMUST00000191593 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm20910-201ENSMUST00000193268 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm37230-201ENSMUST00000194491 818 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm21871-201ENSMUST00000194621 696 ntBASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubfd1Q78JW9 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Gm24543-201ENSMUST00000103867 82 ntBASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Gm27533-201ENSMUST00000183800 152 ntBASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Gm38294-201ENSMUST00000192831 381 ntBASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Ubfd1Q78JW9 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Gm14780-201ENSMUST00000118387 2737 ntBASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Mir8102-201ENSMUST00000184148 139 ntBASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC14.23□□□□□ -0.13
Ubfd1Q78JW9 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 76.7 ms