Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc88aQ5SNZ0 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc88aQ5SNZ0 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.68■□□□□ 0.26
Ccdc88aQ5SNZ0 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc88aQ5SNZ0 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Ccdc88aQ5SNZ0 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 AC156016.3-201ENSMUST00000228623 344 ntBASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 AC238811.1-201ENSMUST00000225302 441 ntBASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Ccdc88aQ5SNZ0 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm27631-201ENSMUST00000184163 466 ntBASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Ccdc88aQ5SNZ0 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Gm7390-201ENSMUST00000212452 1216 ntBASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Fbxl12-205ENSMUST00000140702 1555 ntBASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC16.65■□□□□ 0.26
Ccdc88aQ5SNZ0 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.26
Ccdc88aQ5SNZ0 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Cd63-ps-201ENSMUST00000145417 875 ntBASIC16.64■□□□□ 0.25
Ccdc88aQ5SNZ0 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms