Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Rfx1P48377 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rfx1P48377 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Rfx1P48377 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Rfx1P48377 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Rfx1P48377 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC17.51■□□□□ 0.39
Rfx1P48377 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Rfx1P48377 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Gm33142-201ENSMUST00000193913 867 ntBASIC17.51■□□□□ 0.39
Rfx1P48377 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC17.51■□□□□ 0.39
Rfx1P48377 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Rfx1P48377 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.51■□□□□ 0.39
Rfx1P48377 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC17.51■□□□□ 0.39
Rfx1P48377 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rfx1P48377 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Rfx1P48377 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
Rfx1P48377 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Rfx1P48377 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC17.5■□□□□ 0.39
Rfx1P48377 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC17.5■□□□□ 0.39
Rfx1P48377 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.5■□□□□ 0.39
Rfx1P48377 AC151836.1-202ENSMUST00000226259 753 ntBASIC17.5■□□□□ 0.39
Rfx1P48377 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rfx1P48377 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Rfx1P48377 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 AC130669.1-201ENSMUST00000228537 1672 ntBASIC17.49■□□□□ 0.39
Rfx1P48377 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Rfx1P48377 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC17.49■□□□□ 0.39
Rfx1P48377 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC17.49■□□□□ 0.39
Rfx1P48377 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rfx1P48377 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Rfx1P48377 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC17.48■□□□□ 0.39
Rfx1P48377 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Gm13836-201ENSMUST00000121159 501 ntBASIC17.48■□□□□ 0.39
Rfx1P48377 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.48■□□□□ 0.39
Rfx1P48377 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC17.48■□□□□ 0.39
Rfx1P48377 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.48■□□□□ 0.39
Rfx1P48377 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Rfx1P48377 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC17.48■□□□□ 0.39
Rfx1P48377 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms