Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cd40lgP27548 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cd40lgP27548 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Gm42901-201ENSMUST00000197735 3171 ntBASIC13.51□□□□□ -0.25
Cd40lgP27548 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Gm27702-201ENSMUST00000184512 56 ntBASIC13.51□□□□□ -0.25
Cd40lgP27548 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC13.51□□□□□ -0.25
Cd40lgP27548 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.51□□□□□ -0.25
Cd40lgP27548 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 AC159649.2-201ENSMUST00000222984 3223 ntBASIC13.51□□□□□ -0.25
Cd40lgP27548 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
Cd40lgP27548 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cd40lgP27548 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.5□□□□□ -0.25
Cd40lgP27548 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.5□□□□□ -0.25
Cd40lgP27548 Gm14822-201ENSMUST00000122247 291 ntBASIC13.5□□□□□ -0.25
Cd40lgP27548 Gm5177-201ENSMUST00000183092 997 ntBASIC13.5□□□□□ -0.25
Cd40lgP27548 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.5□□□□□ -0.25
Cd40lgP27548 Gm10154-201ENSMUST00000084445 354 ntBASIC13.5□□□□□ -0.25
Cd40lgP27548 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Cd40lgP27548 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cd40lgP27548 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.49□□□□□ -0.25
Cd40lgP27548 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Cd40lgP27548 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC13.49□□□□□ -0.25
Cd40lgP27548 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Gm43399-201ENSMUST00000202546 2374 ntBASIC13.49□□□□□ -0.25
Cd40lgP27548 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Cd40lgP27548 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.49□□□□□ -0.25
Cd40lgP27548 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC13.49□□□□□ -0.25
Cd40lgP27548 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
Cd40lgP27548 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms