Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col3a1P08121 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC17.29■□□□□ 0.36
Col3a1P08121 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col3a1P08121 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col3a1P08121 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Ighv5-13-201ENSMUST00000193550 290 ntBASIC17.29■□□□□ 0.36
Col3a1P08121 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC17.29■□□□□ 0.36
Col3a1P08121 Gm18187-201ENSMUST00000196476 984 ntBASIC17.29■□□□□ 0.36
Col3a1P08121 AC155729.1-201ENSMUST00000227758 544 ntBASIC17.29■□□□□ 0.36
Col3a1P08121 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC17.29■□□□□ 0.36
Col3a1P08121 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col3a1P08121 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col3a1P08121 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col3a1P08121 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Col3a1P08121 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Gm18018-201ENSMUST00000198273 408 ntBASIC17.28■□□□□ 0.36
Col3a1P08121 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC17.28■□□□□ 0.36
Col3a1P08121 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC17.28■□□□□ 0.36
Col3a1P08121 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col3a1P08121 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col3a1P08121 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Col3a1P08121 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Col3a1P08121 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col3a1P08121 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col3a1P08121 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col3a1P08121 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col3a1P08121 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Col3a1P08121 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col3a1P08121 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC17.27■□□□□ 0.36
Col3a1P08121 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC17.27■□□□□ 0.36
Col3a1P08121 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col3a1P08121 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col3a1P08121 Gm37917-201ENSMUST00000194711 392 ntBASIC17.27■□□□□ 0.36
Col3a1P08121 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC17.27■□□□□ 0.36
Col3a1P08121 Gm5425-201ENSMUST00000214125 459 ntBASIC17.27■□□□□ 0.36
Col3a1P08121 AC139580.1-202ENSMUST00000223574 928 ntBASIC17.27■□□□□ 0.36
Col3a1P08121 AC132467.2-202ENSMUST00000227726 559 ntBASIC17.27■□□□□ 0.36
Col3a1P08121 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col3a1P08121 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col3a1P08121 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col3a1P08121 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Col3a1P08121 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col3a1P08121 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Col3a1P08121 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col3a1P08121 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col3a1P08121 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC17.27■□□□□ 0.35
Col3a1P08121 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Gm21470-201ENSMUST00000187680 696 ntBASIC17.26■□□□□ 0.35
Col3a1P08121 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC17.26■□□□□ 0.35
Col3a1P08121 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC17.26■□□□□ 0.35
Col3a1P08121 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Gm14452-201ENSMUST00000118680 1632 ntBASIC17.26■□□□□ 0.35
Col3a1P08121 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Col3a1P08121 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC17.26■□□□□ 0.35
Col3a1P08121 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
Col3a1P08121 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col3a1P08121 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Gm15240-201ENSMUST00000118156 720 ntBASIC17.25■□□□□ 0.35
Col3a1P08121 Gm12138-201ENSMUST00000122180 951 ntBASIC17.25■□□□□ 0.35
Col3a1P08121 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC17.25■□□□□ 0.35
Col3a1P08121 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC17.25■□□□□ 0.35
Col3a1P08121 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Col3a1P08121 Gm45059-201ENSMUST00000205558 1077 ntBASIC17.25■□□□□ 0.35
Col3a1P08121 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC17.25■□□□□ 0.35
Col3a1P08121 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.25■□□□□ 0.35
Col3a1P08121 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col3a1P08121 Gm4081-201ENSMUST00000195287 1838 ntBASIC17.25■□□□□ 0.35
Col3a1P08121 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms