Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Gm28182-201ENSMUST00000188354 2477 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC12.13□□□□□ -0.47
Hmgb3O54879 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Hmgb3O54879 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Gm1818-201ENSMUST00000169406 1184 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Hmgb3O54879 AC134329.2-201ENSMUST00000217897 428 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 AC125350.1-201ENSMUST00000225115 903 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 AC159093.1-201ENSMUST00000227779 380 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 AC130713.1-201ENSMUST00000228853 1096 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Matn2-206ENSMUST00000228570 2798 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC12.13□□□□□ -0.47
Hmgb3O54879 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Hmgb3O54879 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Lrba-202ENSMUST00000192145 8843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Hmgb3O54879 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Gm14722-201ENSMUST00000118943 689 ntBASIC12.12□□□□□ -0.47
Hmgb3O54879 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Gm6623-201ENSMUST00000173570 544 ntBASIC12.12□□□□□ -0.47
Hmgb3O54879 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC12.12□□□□□ -0.47
Hmgb3O54879 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Gm8349-201ENSMUST00000182720 1003 ntBASIC12.12□□□□□ -0.47
Hmgb3O54879 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Hmgb3O54879 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Gm19863-201ENSMUST00000192480 2218 ntBASIC12.12□□□□□ -0.47
Hmgb3O54879 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Hmgb3O54879 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Hmgb3O54879 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Gm43056-201ENSMUST00000197865 2791 ntBASIC12.11□□□□□ -0.47
Hmgb3O54879 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC12.11□□□□□ -0.47
Hmgb3O54879 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Gm43799-201ENSMUST00000201845 579 ntBASIC12.11□□□□□ -0.47
Hmgb3O54879 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 AC117588.1-201ENSMUST00000228510 999 ntBASIC12.11□□□□□ -0.47
Hmgb3O54879 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms