Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clk3O35492 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clk3O35492 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clk3O35492 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Clk3O35492 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
Clk3O35492 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
Clk3O35492 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC13.96□□□□□ -0.18
Clk3O35492 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Clk3O35492 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
Clk3O35492 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Clk3O35492 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC13.95□□□□□ -0.18
Clk3O35492 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.95□□□□□ -0.18
Clk3O35492 Gm45167-201ENSMUST00000208007 322 ntBASIC13.95□□□□□ -0.18
Clk3O35492 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Clk3O35492 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.95□□□□□ -0.18
Clk3O35492 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.95□□□□□ -0.18
Clk3O35492 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Clk3O35492 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clk3O35492 AC154527.4-201ENSMUST00000224364 1667 ntBASIC13.95□□□□□ -0.18
Clk3O35492 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Clk3O35492 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC13.94□□□□□ -0.18
Clk3O35492 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Gm12350-201ENSMUST00000121208 462 ntBASIC13.94□□□□□ -0.18
Clk3O35492 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Clk3O35492 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC13.94□□□□□ -0.18
Clk3O35492 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC13.94□□□□□ -0.18
Clk3O35492 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC13.93□□□□□ -0.18
Clk3O35492 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Clk3O35492 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Clk3O35492 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.93□□□□□ -0.18
Clk3O35492 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Clk3O35492 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Clk3O35492 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC13.93□□□□□ -0.18
Clk3O35492 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC13.93□□□□□ -0.18
Clk3O35492 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Clk3O35492 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Clk3O35492 Gm10499-201ENSMUST00000174094 934 ntBASIC13.93□□□□□ -0.18
Clk3O35492 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms