Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Gm10584-201ENSMUST00000207036 2628 ntBASIC14.32□□□□□ -0.12
Chd3B1AR17 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Chd3B1AR17 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Chd3B1AR17 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.31□□□□□ -0.12
Chd3B1AR17 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC14.31□□□□□ -0.12
Chd3B1AR17 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC14.31□□□□□ -0.12
Chd3B1AR17 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.31□□□□□ -0.12
Chd3B1AR17 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.31□□□□□ -0.12
Chd3B1AR17 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.31□□□□□ -0.12
Chd3B1AR17 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Chd3B1AR17 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Chd3B1AR17 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Chd3B1AR17 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Gm42612-201ENSMUST00000197986 623 ntBASIC14.3□□□□□ -0.12
Chd3B1AR17 Gm43170-201ENSMUST00000199827 612 ntBASIC14.3□□□□□ -0.12
Chd3B1AR17 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.3□□□□□ -0.12
Chd3B1AR17 AC132863.2-201ENSMUST00000226643 799 ntBASIC14.3□□□□□ -0.12
Chd3B1AR17 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Gm15653-201ENSMUST00000119247 907 ntBASIC14.3□□□□□ -0.12
Chd3B1AR17 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Chd3B1AR17 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC14.3□□□□□ -0.12
Chd3B1AR17 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Chd3B1AR17 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms