Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm15823-201ENSMUST00000064305 670 ntBASIC17.14■□□□□ 0.33
Scn11aQ9R053 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Gm13392-201ENSMUST00000117708 150 ntBASIC17.13■□□□□ 0.33
Scn11aQ9R053 Ldha-ps-201ENSMUST00000119390 995 ntBASIC17.13■□□□□ 0.33
Scn11aQ9R053 AC162801.1-201ENSMUST00000220612 198 ntBASIC17.13■□□□□ 0.33
Scn11aQ9R053 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Gm38037-201ENSMUST00000192600 1624 ntBASIC17.13■□□□□ 0.33
Scn11aQ9R053 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn11aQ9R053 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Gm6283-201ENSMUST00000182369 1000 ntBASIC17.12■□□□□ 0.33
Scn11aQ9R053 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Gm42690-201ENSMUST00000197921 1836 ntBASIC17.12■□□□□ 0.33
Scn11aQ9R053 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn11aQ9R053 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Gm4984-201ENSMUST00000115987 360 ntBASIC17.11■□□□□ 0.33
Scn11aQ9R053 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC17.11■□□□□ 0.33
Scn11aQ9R053 AC154846.1-201ENSMUST00000226278 862 ntBASIC17.11■□□□□ 0.33
Scn11aQ9R053 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Scn11aQ9R053 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Gm8062-201ENSMUST00000139696 444 ntBASIC17.1■□□□□ 0.33
Scn11aQ9R053 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Scn11aQ9R053 AC165157.4-201ENSMUST00000220587 139 ntBASIC17.1■□□□□ 0.33
Scn11aQ9R053 AC238811.3-201ENSMUST00000225422 709 ntBASIC17.1■□□□□ 0.33
Scn11aQ9R053 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Scn11aQ9R053 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Scn11aQ9R053 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms