Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Gm42997-202ENSMUST00000200321 985 ntBASIC19.6■□□□□ 0.73
Scn4aQ9ER60 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Gm11964-201ENSMUST00000120982 444 ntBASIC19.6■□□□□ 0.73
Scn4aQ9ER60 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Scn4aQ9ER60 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Gm42471-201ENSMUST00000201457 1865 ntBASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Gm11331-201ENSMUST00000119764 288 ntBASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Gm14017-201ENSMUST00000121934 386 ntBASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
Scn4aQ9ER60 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Gm37489-201ENSMUST00000191883 159 ntBASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Ighv8-14-201ENSMUST00000196781 358 ntBASIC19.58■□□□□ 0.73
Scn4aQ9ER60 AC073947.2-201ENSMUST00000215888 1130 ntBASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Gm10146-201ENSMUST00000072739 309 ntBASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Scn4aQ9ER60 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Gm7467-201ENSMUST00000185173 652 ntBASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Scn4aQ9ER60 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Scn4aQ9ER60 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms