Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Upf1Q9EPU0 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Upf1Q9EPU0 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Gm13297-201ENSMUST00000120205 934 ntBASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Gm5069-202ENSMUST00000192714 1011 ntBASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Gm19208-201ENSMUST00000213861 912 ntBASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Gm10268-201ENSMUST00000085340 555 ntBASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Upf1Q9EPU0 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm12203-201ENSMUST00000118235 598 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm12209-201ENSMUST00000120089 596 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm38223-201ENSMUST00000194484 695 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm45186-201ENSMUST00000206874 478 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm10109-202ENSMUST00000206890 1211 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm21769-201ENSMUST00000211922 111 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 AC132384.14-201ENSMUST00000219346 1147 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Gm37811-201ENSMUST00000192416 2601 ntBASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Upf1Q9EPU0 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Upf1Q9EPU0 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Upf1Q9EPU0 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Gm25261-201ENSMUST00000157416 134 ntBASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Upf1Q9EPU0 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC16.38■□□□□ 0.21
Upf1Q9EPU0 Gm25927-201ENSMUST00000175058 117 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms