Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Gm44645-201ENSMUST00000205492 1653 ntBASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Rnf220Q6PDX6 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Gm10231-201ENSMUST00000181584 441 ntBASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Gm10175-202ENSMUST00000208752 441 ntBASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Rnf220Q6PDX6 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 AC130713.1-201ENSMUST00000228853 1096 ntBASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Rnf220Q6PDX6 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Gm11950-201ENSMUST00000121615 838 ntBASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Rnf220Q6PDX6 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms