Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
ShhQ62226 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC13.69□□□□□ -0.22
ShhQ62226 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.68□□□□□ -0.22
ShhQ62226 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Gm13294-201ENSMUST00000121757 1330 ntBASIC13.68□□□□□ -0.22
ShhQ62226 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
ShhQ62226 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Gm7901-201ENSMUST00000120430 1597 ntBASIC13.68□□□□□ -0.22
ShhQ62226 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
ShhQ62226 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.68□□□□□ -0.22
ShhQ62226 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.68□□□□□ -0.22
ShhQ62226 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
ShhQ62226 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.68□□□□□ -0.22
ShhQ62226 Thap2-203ENSMUST00000218989 527 ntBASIC13.68□□□□□ -0.22
ShhQ62226 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
ShhQ62226 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC13.68□□□□□ -0.22
ShhQ62226 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC13.68□□□□□ -0.22
ShhQ62226 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC13.68□□□□□ -0.22
ShhQ62226 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
ShhQ62226 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
ShhQ62226 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC13.67□□□□□ -0.22
ShhQ62226 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
ShhQ62226 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
ShhQ62226 Gm22065-201ENSMUST00000103753 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm22066-201ENSMUST00000103761 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24932-201ENSMUST00000103763 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24115-201ENSMUST00000103799 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm22190-201ENSMUST00000103827 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm22191-201ENSMUST00000103831 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24721-201ENSMUST00000103849 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm28018-201ENSMUST00000103869 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm26399-201ENSMUST00000103937 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
ShhQ62226 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Gm25349-201ENSMUST00000177728 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm23616-201ENSMUST00000177797 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm25871-201ENSMUST00000177816 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24752-201ENSMUST00000178240 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24496-201ENSMUST00000178287 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm25649-201ENSMUST00000178476 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm25548-201ENSMUST00000178681 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Gm23147-201ENSMUST00000178841 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm26095-201ENSMUST00000179270 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm22171-201ENSMUST00000179283 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm23936-201ENSMUST00000179354 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm22619-201ENSMUST00000179516 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm25255-201ENSMUST00000179579 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24755-201ENSMUST00000179691 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm26506-201ENSMUST00000179692 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm25086-201ENSMUST00000179931 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm23243-201ENSMUST00000180047 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24659-201ENSMUST00000180212 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm24169-201ENSMUST00000180244 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm23689-201ENSMUST00000180354 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm27359-201ENSMUST00000184153 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm27785-201ENSMUST00000184268 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gm27466-201ENSMUST00000184396 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
ShhQ62226 Gm27703-201ENSMUST00000184836 110 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC13.67□□□□□ -0.22
ShhQ62226 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
ShhQ62226 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC13.67□□□□□ -0.22
ShhQ62226 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms