Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col11a1Q61245 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Col11a1Q61245 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Gm8801-201ENSMUST00000173255 1064 ntBASIC16.12■□□□□ 0.17
Col11a1Q61245 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Col11a1Q61245 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Col11a1Q61245 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC16.12■□□□□ 0.17
Col11a1Q61245 Gm27528-202ENSMUST00000222916 2012 ntBASIC16.12■□□□□ 0.17
Col11a1Q61245 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.12■□□□□ 0.17
Col11a1Q61245 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Col11a1Q61245 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC16.11■□□□□ 0.17
Col11a1Q61245 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC16.11■□□□□ 0.17
Col11a1Q61245 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col11a1Q61245 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 AC102291.3-201ENSMUST00000226566 405 ntBASIC16.11■□□□□ 0.17
Col11a1Q61245 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC16.11■□□□□ 0.17
Col11a1Q61245 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Col11a1Q61245 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Col11a1Q61245 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm8810-201ENSMUST00000172895 754 ntBASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm27243-201ENSMUST00000183964 521 ntBASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm43133-201ENSMUST00000197472 463 ntBASIC16.1■□□□□ 0.17
Col11a1Q61245 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm42471-201ENSMUST00000201457 1865 ntBASIC16.1■□□□□ 0.17
Col11a1Q61245 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm14730-201ENSMUST00000122378 1045 ntBASIC16.1■□□□□ 0.17
Col11a1Q61245 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Gm7498-201ENSMUST00000203282 1084 ntBASIC16.1■□□□□ 0.17
Col11a1Q61245 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Col11a1Q61245 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Col11a1Q61245 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC16.09■□□□□ 0.17
Col11a1Q61245 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.09■□□□□ 0.17
Col11a1Q61245 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Gm15236-201ENSMUST00000117309 379 ntBASIC16.09■□□□□ 0.17
Col11a1Q61245 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC16.09■□□□□ 0.17
Col11a1Q61245 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
Col11a1Q61245 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Col11a1Q61245 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC16.09■□□□□ 0.17
Col11a1Q61245 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Col11a1Q61245 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Col11a1Q61245 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms