Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Gm14451-201ENSMUST00000121581 1542 ntBASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Scaf1Q5U4C3 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Gm6473-201ENSMUST00000188572 1210 ntBASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Ighv8-14-201ENSMUST00000196781 358 ntBASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Scaf1Q5U4C3 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Gm43433-201ENSMUST00000196573 481 ntBASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Gm6745-201ENSMUST00000199216 526 ntBASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Scaf1Q5U4C3 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scaf1Q5U4C3 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Scaf1Q5U4C3 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scaf1Q5U4C3 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scaf1Q5U4C3 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Scaf1Q5U4C3 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 AC155286.1-201ENSMUST00000218632 448 ntBASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Scaf1Q5U4C3 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Gm14452-201ENSMUST00000118680 1632 ntBASIC19■□□□□ 0.63
Scaf1Q5U4C3 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Gm6912-201ENSMUST00000117218 544 ntBASIC19■□□□□ 0.63
Scaf1Q5U4C3 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Gm11478-201ENSMUST00000117851 599 ntBASIC19■□□□□ 0.63
Scaf1Q5U4C3 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Gm5279-201ENSMUST00000199575 745 ntBASIC19■□□□□ 0.63
Scaf1Q5U4C3 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Scaf1Q5U4C3 Gm45384-201ENSMUST00000210451 277 ntBASIC19■□□□□ 0.63
Scaf1Q5U4C3 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms