Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC25.33■■□□□ 1.65
Trim41Q5NCC3 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC25.33■■□□□ 1.65
Trim41Q5NCC3 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trim41Q5NCC3 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trim41Q5NCC3 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
Trim41Q5NCC3 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trim41Q5NCC3 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Trim41Q5NCC3 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Gm19891-201ENSMUST00000189771 303 ntBASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Gm43703-201ENSMUST00000200523 763 ntBASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 AC238811.1-201ENSMUST00000225302 441 ntBASIC25.32■■□□□ 1.64
Trim41Q5NCC3 AC149588.3-201ENSMUST00000227515 150 ntBASIC25.32■■□□□ 1.64
Trim41Q5NCC3 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC25.32■■□□□ 1.64
Trim41Q5NCC3 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Gm12960-201ENSMUST00000120017 1066 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Gm18056-201ENSMUST00000207670 568 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Gm18061-201ENSMUST00000208350 562 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Gm18063-201ENSMUST00000208529 568 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Gm18052-201ENSMUST00000208750 559 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Gm45453-201ENSMUST00000211758 853 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Gm46209-201ENSMUST00000217912 553 ntBASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Trim41Q5NCC3 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Gm17420-201ENSMUST00000164753 153 ntBASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Gm38241-201ENSMUST00000192641 898 ntBASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Gm18753-201ENSMUST00000201000 566 ntBASIC25.3■■□□□ 1.64
Trim41Q5NCC3 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trim41Q5NCC3 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Gm15782-201ENSMUST00000121073 445 ntBASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Gm37917-201ENSMUST00000194711 392 ntBASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Gm45195-201ENSMUST00000205597 1008 ntBASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trim41Q5NCC3 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Trim41Q5NCC3 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC25.28■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms