Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Usp28Q5I043 Gm28659-201ENSMUST00000188013 759 ntBASIC16.66■□□□□ 0.26
Usp28Q5I043 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.66■□□□□ 0.26
Usp28Q5I043 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC16.66■□□□□ 0.26
Usp28Q5I043 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
Usp28Q5I043 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Usp28Q5I043 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC16.66■□□□□ 0.26
Usp28Q5I043 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Usp28Q5I043 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Gm12350-201ENSMUST00000121208 462 ntBASIC16.65■□□□□ 0.26
Usp28Q5I043 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp28Q5I043 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 AC164565.1-201ENSMUST00000217520 1484 ntBASIC16.65■□□□□ 0.26
Usp28Q5I043 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Usp28Q5I043 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
Usp28Q5I043 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.65■□□□□ 0.26
Usp28Q5I043 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Usp28Q5I043 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp28Q5I043 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.64■□□□□ 0.25
Usp28Q5I043 AC166574.6-201ENSMUST00000227889 1806 ntBASIC16.64■□□□□ 0.25
Usp28Q5I043 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp28Q5I043 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp28Q5I043 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.64■□□□□ 0.25
Usp28Q5I043 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.64■□□□□ 0.25
Usp28Q5I043 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp28Q5I043 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp28Q5I043 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Usp28Q5I043 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Usp28Q5I043 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Usp28Q5I043 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Usp28Q5I043 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 AC154527.4-201ENSMUST00000224364 1667 ntBASIC16.63■□□□□ 0.25
Usp28Q5I043 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.63■□□□□ 0.25
Usp28Q5I043 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Gm8096-201ENSMUST00000209921 1591 ntBASIC16.63■□□□□ 0.25
Usp28Q5I043 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Gm43399-201ENSMUST00000202546 2374 ntBASIC16.63■□□□□ 0.25
Usp28Q5I043 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Usp28Q5I043 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.63■□□□□ 0.25
Usp28Q5I043 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 AC159649.2-201ENSMUST00000222984 3223 ntBASIC16.62■□□□□ 0.25
Usp28Q5I043 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Usp28Q5I043 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Usp28Q5I043 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms