Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Nkx3-1P97436 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gm7488-201ENSMUST00000117148 684 ntBASIC12.65□□□□□ -0.38
Nkx3-1P97436 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gm27838-201ENSMUST00000184829 128 ntBASIC12.65□□□□□ -0.38
Nkx3-1P97436 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gm44855-201ENSMUST00000205725 362 ntBASIC12.65□□□□□ -0.38
Nkx3-1P97436 AC132863.2-201ENSMUST00000226643 799 ntBASIC12.65□□□□□ -0.38
Nkx3-1P97436 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Nkx3-1P97436 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Nkx3-1P97436 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.39
Nkx3-1P97436 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
Nkx3-1P97436 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Syt7-204ENSMUST00000223586 1344 ntBASIC12.64□□□□□ -0.39
Nkx3-1P97436 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Gm6944-201ENSMUST00000182449 1006 ntBASIC12.64□□□□□ -0.39
Nkx3-1P97436 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.64□□□□□ -0.39
Nkx3-1P97436 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.64□□□□□ -0.39
Nkx3-1P97436 Shd-206ENSMUST00000225145 998 ntBASIC12.64□□□□□ -0.39
Nkx3-1P97436 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Mxra8os-201ENSMUST00000097740 687 ntBASIC12.64□□□□□ -0.39
Nkx3-1P97436 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Nkx3-1P97436 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Nkx3-1P97436 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.63□□□□□ -0.39
Nkx3-1P97436 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Nkx3-1P97436 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Gm45098-201ENSMUST00000207179 657 ntBASIC12.63□□□□□ -0.39
Nkx3-1P97436 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC12.63□□□□□ -0.39
Nkx3-1P97436 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Gm5049-201ENSMUST00000195878 1590 ntBASIC12.63□□□□□ -0.39
Nkx3-1P97436 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Nkx3-1P97436 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms