Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdh11P55288 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdh11P55288 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdh11P55288 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdh11P55288 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Cdh11P55288 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Cdh11P55288 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdh11P55288 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdh11P55288 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdh11P55288 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Cdh11P55288 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdh11P55288 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Cdh11P55288 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC13.38□□□□□ -0.27
Cdh11P55288 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC13.38□□□□□ -0.27
Cdh11P55288 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 AC093926.2-201ENSMUST00000214468 1228 ntBASIC13.38□□□□□ -0.27
Cdh11P55288 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC13.38□□□□□ -0.27
Cdh11P55288 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Cdh11P55288 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Cdh11P55288 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Cdh11P55288 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC13.38□□□□□ -0.27
Cdh11P55288 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdh11P55288 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
Cdh11P55288 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Cdh11P55288 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Gm12008-201ENSMUST00000117791 755 ntBASIC13.37□□□□□ -0.27
Cdh11P55288 Gm11764-201ENSMUST00000120221 623 ntBASIC13.37□□□□□ -0.27
Cdh11P55288 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC13.37□□□□□ -0.27
Cdh11P55288 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC13.37□□□□□ -0.27
Cdh11P55288 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdh11P55288 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Cdh11P55288 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdh11P55288 Gm37153-201ENSMUST00000193637 231 ntBASIC13.37□□□□□ -0.27
Cdh11P55288 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC13.37□□□□□ -0.27
Cdh11P55288 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 AC122901.1-201ENSMUST00000214203 1790 ntBASIC13.37□□□□□ -0.27
Cdh11P55288 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Cdh11P55288 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdh11P55288 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC13.37□□□□□ -0.27
Cdh11P55288 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Cdh11P55288 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Cdh11P55288 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC13.36□□□□□ -0.27
Cdh11P55288 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC13.36□□□□□ -0.27
Cdh11P55288 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Cdh11P55288 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Cdh11P55288 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC13.36□□□□□ -0.27
Cdh11P55288 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Cdh11P55288 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms