Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Tnfsf4P43488 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Tnfsf4P43488 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 AC025913.2-201ENSMUST00000220136 1766 ntBASIC14.17□□□□□ -0.14
Tnfsf4P43488 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Gm4899-201ENSMUST00000178708 719 ntBASIC14.17□□□□□ -0.14
Tnfsf4P43488 Gm21362-201ENSMUST00000194272 928 ntBASIC14.17□□□□□ -0.14
Tnfsf4P43488 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Tnfsf4P43488 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Gm9103-201ENSMUST00000119371 405 ntBASIC14.16□□□□□ -0.14
Tnfsf4P43488 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Tnfsf4P43488 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Tnfsf4P43488 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.15□□□□□ -0.14
Tnfsf4P43488 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Gm24589-201ENSMUST00000116692 94 ntBASIC14.15□□□□□ -0.14
Tnfsf4P43488 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC14.15□□□□□ -0.14
Tnfsf4P43488 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Tnfsf4P43488 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms