Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sdc1P18828 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sdc1P18828 Gm4081-201ENSMUST00000195287 1838 ntBASIC12.02□□□□□ -0.48
Sdc1P18828 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Sdc1P18828 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sdc1P18828 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC12.02□□□□□ -0.48
Sdc1P18828 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Sdc1P18828 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Sdc1P18828 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC12.02□□□□□ -0.49
Sdc1P18828 Gm25406-201ENSMUST00000157599 105 ntBASIC12.02□□□□□ -0.49
Sdc1P18828 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Sdc1P18828 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC12.02□□□□□ -0.49
Sdc1P18828 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC12.02□□□□□ -0.49
Sdc1P18828 Gm19164-201ENSMUST00000210667 640 ntBASIC12.02□□□□□ -0.49
Sdc1P18828 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC12.02□□□□□ -0.49
Sdc1P18828 Gm9987-201ENSMUST00000069768 567 ntBASIC12.02□□□□□ -0.49
Sdc1P18828 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Sdc1P18828 Gm10602-201ENSMUST00000098239 609 ntBASIC12.02□□□□□ -0.49
Sdc1P18828 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC12.02□□□□□ -0.49
Sdc1P18828 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC12.02□□□□□ -0.49
Sdc1P18828 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.02□□□□□ -0.49
Sdc1P18828 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sdc1P18828 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
Sdc1P18828 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Grk6-205ENSMUST00000224653 2976 ntBASIC12.01□□□□□ -0.49
Sdc1P18828 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC12.01□□□□□ -0.49
Sdc1P18828 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC12.01□□□□□ -0.49
Sdc1P18828 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC12.01□□□□□ -0.49
Sdc1P18828 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC12.01□□□□□ -0.49
Sdc1P18828 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Sdc1P18828 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sdc1P18828 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Gm45293-201ENSMUST00000209754 1812 ntBASIC12□□□□□ -0.49
Sdc1P18828 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Gm4609-201ENSMUST00000106443 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Gm5138-201ENSMUST00000113842 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm15191-201ENSMUST00000117933 1000 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm12182-201ENSMUST00000118655 1008 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm13882-201ENSMUST00000120886 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm10284-201ENSMUST00000145057 1005 ntBASIC12□□□□□ -0.49
Sdc1P18828 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sdc1P18828 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12□□□□□ -0.49
Sdc1P18828 Gm10481-201ENSMUST00000179228 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm2574-201ENSMUST00000181051 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm3200-201ENSMUST00000181493 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm8825-201ENSMUST00000182565 998 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm4518-201ENSMUST00000182638 718 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm8330-201ENSMUST00000182754 1008 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm4575-201ENSMUST00000182991 1002 ntBASIC12□□□□□ -0.49
Sdc1P18828 Gm8709-201ENSMUST00000183230 1012 ntBASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms