Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Gm37935-201ENSMUST00000192012 982 ntBASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Gm10175-201ENSMUST00000086013 645 ntBASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Gm16198-201ENSMUST00000118766 670 ntBASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC15.97■□□□□ 0.15
Chmp6P0C0A3 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Gm13410-201ENSMUST00000117058 1415 ntBASIC15.96■□□□□ 0.15
Chmp6P0C0A3 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Gm27397-201ENSMUST00000184997 107 ntBASIC15.96■□□□□ 0.15
Chmp6P0C0A3 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 AC164567.1-201ENSMUST00000219185 960 ntBASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Gm43195-201ENSMUST00000200614 2332 ntBASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chmp6P0C0A3 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Chmp6P0C0A3 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
Chmp6P0C0A3 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Chmp6P0C0A3 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.14
Chmp6P0C0A3 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Gm12892-201ENSMUST00000117367 1146 ntBASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Gm9385-201ENSMUST00000117563 472 ntBASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Gm25911-201ENSMUST00000157621 56 ntBASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Gm24513-201ENSMUST00000174964 138 ntBASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Gm43767-201ENSMUST00000198933 381 ntBASIC15.95■□□□□ 0.14
Chmp6P0C0A3 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Chmp6P0C0A3 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms