Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Asic1-205ENSMUST00000228185 1818 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Fgf17-202ENSMUST00000227123 1336 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm22065-201ENSMUST00000103753 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm22066-201ENSMUST00000103761 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24932-201ENSMUST00000103763 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24115-201ENSMUST00000103799 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm22190-201ENSMUST00000103827 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm22191-201ENSMUST00000103831 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24721-201ENSMUST00000103849 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm28018-201ENSMUST00000103869 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm26399-201ENSMUST00000103937 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Mir449b-201ENSMUST00000104833 80 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm2810-201ENSMUST00000118681 990 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm14913-201ENSMUST00000120011 1093 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm22885-201ENSMUST00000157410 107 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm25349-201ENSMUST00000177728 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm23616-201ENSMUST00000177797 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm25871-201ENSMUST00000177816 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24752-201ENSMUST00000178240 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24496-201ENSMUST00000178287 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm25649-201ENSMUST00000178476 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm25548-201ENSMUST00000178681 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm23147-201ENSMUST00000178841 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm26095-201ENSMUST00000179270 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm22171-201ENSMUST00000179283 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm23936-201ENSMUST00000179354 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm22619-201ENSMUST00000179516 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm25255-201ENSMUST00000179579 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24755-201ENSMUST00000179691 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm26506-201ENSMUST00000179692 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm25086-201ENSMUST00000179931 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm23243-201ENSMUST00000180047 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24659-201ENSMUST00000180212 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm24169-201ENSMUST00000180244 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm23689-201ENSMUST00000180354 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Mir6956-201ENSMUST00000183598 62 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm27359-201ENSMUST00000184153 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm27785-201ENSMUST00000184268 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm27466-201ENSMUST00000184396 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm27703-201ENSMUST00000184836 110 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm18351-201ENSMUST00000188646 883 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Gm10253-201ENSMUST00000194270 940 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC11.43□□□□□ -0.58
Hoxd3P09027 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC11.43□□□□□ -0.58
Hoxd3P09027 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Hoxd3P09027 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Hoxd3P09027 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Hoxd3P09027 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Gm11839-201ENSMUST00000120647 1953 ntBASIC11.42□□□□□ -0.58
Hoxd3P09027 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Hoxd3P09027 Gm10576-201ENSMUST00000191927 825 ntBASIC11.42□□□□□ -0.58
Hoxd3P09027 Gm38225-201ENSMUST00000194001 393 ntBASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms