Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC12.59□□□□□ -0.39
Cldn1O88551 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.59□□□□□ -0.39
Cldn1O88551 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC12.59□□□□□ -0.39
Cldn1O88551 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Cldn1O88551 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Cldn1O88551 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC12.58□□□□□ -0.39
Cldn1O88551 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Cldn1O88551 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Gm16026-204ENSMUST00000162652 683 ntBASIC12.58□□□□□ -0.4
Cldn1O88551 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Gm8116-201ENSMUST00000182917 1201 ntBASIC12.58□□□□□ -0.4
Cldn1O88551 Gm27838-201ENSMUST00000184829 128 ntBASIC12.58□□□□□ -0.4
Cldn1O88551 Gm18766-201ENSMUST00000189811 808 ntBASIC12.58□□□□□ -0.4
Cldn1O88551 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Gm18049-201ENSMUST00000208909 581 ntBASIC12.58□□□□□ -0.4
Cldn1O88551 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.58□□□□□ -0.4
Cldn1O88551 Gm7775-201ENSMUST00000218871 853 ntBASIC12.58□□□□□ -0.4
Cldn1O88551 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Cldn1O88551 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Cldn1O88551 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.58□□□□□ -0.4
Cldn1O88551 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Cldn1O88551 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cldn1O88551 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC12.57□□□□□ -0.4
Cldn1O88551 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Cldn1O88551 Prob1-201ENSMUST00000097619 3021 ntBASIC12.57□□□□□ -0.4
Cldn1O88551 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Cldn1O88551 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Cldn1O88551 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC12.57□□□□□ -0.4
Cldn1O88551 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC12.57□□□□□ -0.4
Cldn1O88551 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cldn1O88551 Gm12859-201ENSMUST00000117834 427 ntBASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms