Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Gm44945-201ENSMUST00000206764 1187 ntBASIC14.37□□□□□ -0.11
Cbx4O55187 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC14.37□□□□□ -0.11
Cbx4O55187 AC154572.2-201ENSMUST00000225105 997 ntBASIC14.37□□□□□ -0.11
Cbx4O55187 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
Cbx4O55187 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Cbx4O55187 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Cbx4O55187 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.36□□□□□ -0.11
Cbx4O55187 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Gm9726-201ENSMUST00000180321 678 ntBASIC14.36□□□□□ -0.11
Cbx4O55187 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Cbx4O55187 Gm45747-201ENSMUST00000212203 999 ntBASIC14.36□□□□□ -0.11
Cbx4O55187 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 AC174742.1-201ENSMUST00000218272 304 ntBASIC14.36□□□□□ -0.11
Cbx4O55187 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Cbx4O55187 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Cbx4O55187 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.36□□□□□ -0.11
Cbx4O55187 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.36□□□□□ -0.11
Cbx4O55187 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.36□□□□□ -0.11
Cbx4O55187 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.36□□□□□ -0.11
Cbx4O55187 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Cbx4O55187 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Cbx4O55187 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC14.35□□□□□ -0.11
Cbx4O55187 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC14.35□□□□□ -0.11
Cbx4O55187 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC14.35□□□□□ -0.11
Cbx4O55187 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.35□□□□□ -0.11
Cbx4O55187 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Cbx4O55187 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Cbx4O55187 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Cbx4O55187 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Cbx4O55187 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Cbx4O55187 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Cbx4O55187 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Cbx4O55187 Mir8117-201ENSMUST00000184773 107 ntBASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 188.3 ms