Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Hmgb3O54879 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC12.15□□□□□ -0.46
Hmgb3O54879 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC12.15□□□□□ -0.46
Hmgb3O54879 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Hmgb3O54879 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Hmgb3O54879 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC12.15□□□□□ -0.46
Hmgb3O54879 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.15□□□□□ -0.46
Hmgb3O54879 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC12.15□□□□□ -0.46
Hmgb3O54879 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hmgb3O54879 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Hmgb3O54879 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Hmgb3O54879 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Hmgb3O54879 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm38187-201ENSMUST00000195609 4709 ntBASIC12.14□□□□□ -0.47
Hmgb3O54879 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm25406-201ENSMUST00000157599 105 ntBASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm23547-201ENSMUST00000158210 271 ntBASIC12.14□□□□□ -0.47
Hmgb3O54879 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm18101-201ENSMUST00000215769 548 ntBASIC12.14□□□□□ -0.47
Hmgb3O54879 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gm43570-201ENSMUST00000199951 3688 ntBASIC12.14□□□□□ -0.47
Hmgb3O54879 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hmgb3O54879 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC12.14□□□□□ -0.47
Hmgb3O54879 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Hmgb3O54879 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Hmgb3O54879 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC12.13□□□□□ -0.47
Hmgb3O54879 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms