Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Gm30437-201ENSMUST00000206086 1201 ntBASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Gm5049-201ENSMUST00000195878 1590 ntBASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Trim55G3X8Y1 Gm37861-201ENSMUST00000193534 2869 ntBASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim55G3X8Y1 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Gm16042-201ENSMUST00000204813 1247 ntBASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Gm20632-201ENSMUST00000176760 2427 ntBASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Trim55G3X8Y1 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Trim55G3X8Y1 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Trim55G3X8Y1 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim55G3X8Y1 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim55G3X8Y1 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Trim55G3X8Y1 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Trim55G3X8Y1 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Trim55G3X8Y1 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Trim55G3X8Y1 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim55G3X8Y1 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Trim55G3X8Y1 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.08■□□□□ 0
Trim55G3X8Y1 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC15.08■□□□□ 0
Trim55G3X8Y1 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms