Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Gm5177-201ENSMUST00000183092 997 ntBASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Mir3113-201ENSMUST00000175478 76 ntBASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Gm5712-201ENSMUST00000199748 1043 ntBASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Thap2-203ENSMUST00000218989 527 ntBASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Prpf40aQ9R1C7 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Gm12620-201ENSMUST00000119791 1986 ntBASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Gm12612-201ENSMUST00000140182 1986 ntBASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Gm5264-201ENSMUST00000190584 848 ntBASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Prpf40aQ9R1C7 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.14■□□□□ 0.18
Prpf40aQ9R1C7 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 Gm27301-201ENSMUST00000184012 127 ntBASIC16.14■□□□□ 0.17
Prpf40aQ9R1C7 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms