Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Ushbp1Q8R370 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Gm25948-201ENSMUST00000175334 112 ntBASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Gm2272-201ENSMUST00000194903 582 ntBASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Ushbp1Q8R370 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Gm23547-201ENSMUST00000158210 271 ntBASIC16.43■□□□□ 0.22
Ushbp1Q8R370 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Gm43474-201ENSMUST00000196415 774 ntBASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC16.43■□□□□ 0.22
Ushbp1Q8R370 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Ushbp1Q8R370 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms