Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Gm14822-201ENSMUST00000122247 291 ntBASIC17.73■□□□□ 0.43
Brf1Q8CFK2 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Olfr286-202ENSMUST00000205305 969 ntBASIC17.73■□□□□ 0.43
Brf1Q8CFK2 AC124549.3-201ENSMUST00000225541 367 ntBASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Brf1Q8CFK2 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Gm27920-201ENSMUST00000183953 96 ntBASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Gm45504-201ENSMUST00000211407 2107 ntBASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Brf1Q8CFK2 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.71■□□□□ 0.43
Brf1Q8CFK2 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Gm44443-201ENSMUST00000204396 5633 ntBASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.71■□□□□ 0.43
Brf1Q8CFK2 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Brf1Q8CFK2 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Brf1Q8CFK2 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gm24513-201ENSMUST00000174964 138 ntBASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gm27494-201ENSMUST00000184735 189 ntBASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gm27397-201ENSMUST00000184997 107 ntBASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 AC166341.4-201ENSMUST00000220625 123 ntBASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gm5628-201ENSMUST00000222318 1049 ntBASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms