Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Usp47Q8BY87 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 BC001981-202ENSMUST00000191393 1545 ntBASIC20.66■□□□□ 0.9
Usp47Q8BY87 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC20.66■□□□□ 0.9
Usp47Q8BY87 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp47Q8BY87 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Gm14042-201ENSMUST00000120139 833 ntBASIC20.65■□□□□ 0.9
Usp47Q8BY87 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Usp47Q8BY87 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp47Q8BY87 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp47Q8BY87 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Gm27321-201ENSMUST00000185021 205 ntBASIC20.64■□□□□ 0.89
Usp47Q8BY87 Gm43703-201ENSMUST00000200523 763 ntBASIC20.64■□□□□ 0.89
Usp47Q8BY87 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Gm14451-201ENSMUST00000121581 1542 ntBASIC20.64■□□□□ 0.89
Usp47Q8BY87 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp47Q8BY87 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Gm4081-201ENSMUST00000195287 1838 ntBASIC20.63■□□□□ 0.89
Usp47Q8BY87 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Mir1897-201ENSMUST00000122581 272 ntBASIC20.63■□□□□ 0.89
Usp47Q8BY87 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Mir125a-201ENSMUST00000083545 68 ntBASIC20.63■□□□□ 0.89
Usp47Q8BY87 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms