Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx55Q6ZPL9 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx55Q6ZPL9 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Ddx55Q6ZPL9 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ddx55Q6ZPL9 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 AC166574.6-201ENSMUST00000227889 1806 ntBASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Gm11425-201ENSMUST00000119608 498 ntBASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Mir7654-201ENSMUST00000185082 70 ntBASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Gm7558-201ENSMUST00000193221 1165 ntBASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Gm9396-201ENSMUST00000076703 567 ntBASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
Ddx55Q6ZPL9 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Gm14452-201ENSMUST00000118680 1632 ntBASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 AC155252.1-201ENSMUST00000226462 1208 ntBASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 AC150560.1-201ENSMUST00000227731 1187 ntBASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Gm11839-201ENSMUST00000120647 1953 ntBASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Ccdc166-201ENSMUST00000182172 2584 ntBASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ddx55Q6ZPL9 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Gm27528-202ENSMUST00000222916 2012 ntBASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Gm6007-201ENSMUST00000208170 823 ntBASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 AC154806.6-201ENSMUST00000228192 202 ntBASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ddx55Q6ZPL9 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ddx55Q6ZPL9 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
Ddx55Q6ZPL9 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms