Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Gm9083-201ENSMUST00000120423 819 ntBASIC11.89□□□□□ -0.51
Col7a1Q63870 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.89□□□□□ -0.51
Col7a1Q63870 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC11.89□□□□□ -0.51
Col7a1Q63870 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC11.89□□□□□ -0.51
Col7a1Q63870 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC11.89□□□□□ -0.51
Col7a1Q63870 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.89□□□□□ -0.51
Col7a1Q63870 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Col7a1Q63870 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC11.88□□□□□ -0.51
Col7a1Q63870 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 AC153366.2-201ENSMUST00000219461 1984 ntBASIC11.88□□□□□ -0.51
Col7a1Q63870 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC11.88□□□□□ -0.51
Col7a1Q63870 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Gm21470-201ENSMUST00000187680 696 ntBASIC11.88□□□□□ -0.51
Col7a1Q63870 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.88□□□□□ -0.51
Col7a1Q63870 Olfr286-202ENSMUST00000205305 969 ntBASIC11.88□□□□□ -0.51
Col7a1Q63870 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Col7a1Q63870 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Col7a1Q63870 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm7857-201ENSMUST00000117957 358 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Col7a1Q63870 AC155237.1-201ENSMUST00000226196 1279 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 AC102291.3-201ENSMUST00000226566 405 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm8546-201ENSMUST00000178288 1264 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm43058-201ENSMUST00000197645 625 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm45770-201ENSMUST00000212105 616 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm15370-201ENSMUST00000117158 253 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm13813-201ENSMUST00000120998 787 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm16479-201ENSMUST00000121706 932 ntBASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Col7a1Q63870 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Col7a1Q63870 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col7a1Q63870 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col7a1Q63870 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col7a1Q63870 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col7a1Q63870 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Col7a1Q63870 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col7a1Q63870 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Col7a1Q63870 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms