Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Gm17271-201ENSMUST00000165535 355 ntBASIC10.89□□□□□ -0.67
Foxc1Q61572 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Gm8502-201ENSMUST00000185708 901 ntBASIC10.89□□□□□ -0.67
Foxc1Q61572 Gm8510-201ENSMUST00000189202 895 ntBASIC10.89□□□□□ -0.67
Foxc1Q61572 Gm2316-201ENSMUST00000190613 921 ntBASIC10.89□□□□□ -0.67
Foxc1Q61572 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC10.89□□□□□ -0.67
Foxc1Q61572 AC140209.1-201ENSMUST00000227875 284 ntBASIC10.89□□□□□ -0.67
Foxc1Q61572 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Foxc1Q61572 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Foxc1Q61572 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Foxc1Q61572 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Best4-ps-201ENSMUST00000129783 1380 ntBASIC10.89□□□□□ -0.67
Foxc1Q61572 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Foxc1Q61572 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm5366-201ENSMUST00000215494 1338 ntBASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm14776-201ENSMUST00000121029 887 ntBASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Mir3113-201ENSMUST00000175478 76 ntBASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC10.88□□□□□ -0.67
Foxc1Q61572 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm43084-201ENSMUST00000200696 947 ntBASIC10.88□□□□□ -0.67
Foxc1Q61572 CT025561.1-201ENSMUST00000214972 674 ntBASIC10.88□□□□□ -0.67
Foxc1Q61572 Gm18377-201ENSMUST00000215141 607 ntBASIC10.88□□□□□ -0.67
Foxc1Q61572 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Ndufaf2-202ENSMUST00000223734 556 ntBASIC10.88□□□□□ -0.67
Foxc1Q61572 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Foxc1Q61572 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC10.88□□□□□ -0.67
Foxc1Q61572 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC10.87□□□□□ -0.67
Foxc1Q61572 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Foxc1Q61572 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Gm45133-201ENSMUST00000207548 2773 ntBASIC10.87□□□□□ -0.67
Foxc1Q61572 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Foxc1Q61572 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Gm4899-201ENSMUST00000178708 719 ntBASIC10.87□□□□□ -0.67
Foxc1Q61572 A330048O09Rik-201ENSMUST00000180777 672 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Gm37629-201ENSMUST00000193635 1050 ntBASIC10.87□□□□□ -0.67
Foxc1Q61572 Gm38170-201ENSMUST00000195404 816 ntBASIC10.87□□□□□ -0.67
Foxc1Q61572 AC153912.1-201ENSMUST00000217011 724 ntAPPRIS P1 TSL 3 BASIC10.87□□□□□ -0.67
Foxc1Q61572 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC10.87□□□□□ -0.67
Foxc1Q61572 AC154846.1-201ENSMUST00000226278 862 ntBASIC10.87□□□□□ -0.67
Foxc1Q61572 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Gm38157-201ENSMUST00000194178 1698 ntBASIC10.87□□□□□ -0.67
Foxc1Q61572 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Foxc1Q61572 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Foxc1Q61572 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms