Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ClpbQ60649 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.12□□□□□ -0.15
ClpbQ60649 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.12□□□□□ -0.15
ClpbQ60649 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ClpbQ60649 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ClpbQ60649 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ClpbQ60649 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ClpbQ60649 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
ClpbQ60649 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ClpbQ60649 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
ClpbQ60649 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
ClpbQ60649 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
ClpbQ60649 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
ClpbQ60649 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.11□□□□□ -0.15
ClpbQ60649 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Gm5648-201ENSMUST00000122244 1587 ntBASIC14.11□□□□□ -0.15
ClpbQ60649 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ClpbQ60649 Gm17968-201ENSMUST00000194902 784 ntBASIC14.11□□□□□ -0.15
ClpbQ60649 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
ClpbQ60649 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
ClpbQ60649 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ClpbQ60649 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.11□□□□□ -0.15
ClpbQ60649 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ClpbQ60649 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.1□□□□□ -0.15
ClpbQ60649 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Carlr-201ENSMUST00000181515 2574 ntBASIC14.1□□□□□ -0.15
ClpbQ60649 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.1□□□□□ -0.15
ClpbQ60649 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC14.1□□□□□ -0.15
ClpbQ60649 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC14.1□□□□□ -0.15
ClpbQ60649 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
ClpbQ60649 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
ClpbQ60649 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
ClpbQ60649 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC14.1□□□□□ -0.15
ClpbQ60649 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
ClpbQ60649 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.1□□□□□ -0.15
ClpbQ60649 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC14.1□□□□□ -0.15
ClpbQ60649 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ClpbQ60649 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
ClpbQ60649 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.09□□□□□ -0.15
ClpbQ60649 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
ClpbQ60649 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC14.09□□□□□ -0.15
ClpbQ60649 Gm45747-201ENSMUST00000212203 999 ntBASIC14.09□□□□□ -0.15
ClpbQ60649 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
ClpbQ60649 Gm10313-201ENSMUST00000095320 1002 ntBASIC14.09□□□□□ -0.15
ClpbQ60649 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.09□□□□□ -0.15
ClpbQ60649 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
ClpbQ60649 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms