Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Nr1h4Q60641 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Nr1h4Q60641 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Nr1h4Q60641 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14□□□□□ -0.17
Nr1h4Q60641 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC14□□□□□ -0.17
Nr1h4Q60641 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Nr1h4Q60641 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Nr1h4Q60641 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Nr1h4Q60641 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Nr1h4Q60641 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Gm11185-201ENSMUST00000117732 1007 ntBASIC14□□□□□ -0.17
Nr1h4Q60641 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Gm4535-201ENSMUST00000182274 558 ntBASIC14□□□□□ -0.17
Nr1h4Q60641 AC151836.1-202ENSMUST00000226259 753 ntBASIC14□□□□□ -0.17
Nr1h4Q60641 AC154757.1-201ENSMUST00000228289 336 ntBASIC14□□□□□ -0.17
Nr1h4Q60641 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC14□□□□□ -0.17
Nr1h4Q60641 Gm10355-201ENSMUST00000097146 517 ntBASIC14□□□□□ -0.17
Nr1h4Q60641 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Gm21451-201ENSMUST00000111062 2775 ntBASIC14□□□□□ -0.17
Nr1h4Q60641 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Nr1h4Q60641 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Nr1h4Q60641 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14□□□□□ -0.17
Nr1h4Q60641 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14□□□□□ -0.17
Nr1h4Q60641 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Nr1h4Q60641 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Nr1h4Q60641 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Gm5184-201ENSMUST00000220417 1702 ntBASIC13.98□□□□□ -0.17
Nr1h4Q60641 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nr1h4Q60641 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
Nr1h4Q60641 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms