Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3aQ3ULJ3 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3aQ3ULJ3 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3aQ3ULJ3 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3aQ3ULJ3 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
Upf3aQ3ULJ3 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Upf3aQ3ULJ3 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm7390-201ENSMUST00000212452 1216 ntBASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm6180-201ENSMUST00000065243 498 ntBASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Prob1-201ENSMUST00000097619 3021 ntBASIC15.41■□□□□ 0.06
Upf3aQ3ULJ3 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Gm7820-201ENSMUST00000121012 1052 ntBASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Gm30437-201ENSMUST00000206086 1201 ntBASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Upf3aQ3ULJ3 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Gm11839-201ENSMUST00000120647 1953 ntBASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Gm21854-201ENSMUST00000179901 471 ntBASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Gm8515-201ENSMUST00000194852 576 ntBASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Gm6745-201ENSMUST00000199216 526 ntBASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Mir125a-201ENSMUST00000083545 68 ntBASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.39■□□□□ 0.05
Upf3aQ3ULJ3 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms