Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col9a1Q05722 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col9a1Q05722 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col9a1Q05722 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col9a1Q05722 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC14.35□□□□□ -0.11
Col9a1Q05722 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.35□□□□□ -0.11
Col9a1Q05722 Gm38327-201ENSMUST00000195852 1755 ntBASIC14.35□□□□□ -0.11
Col9a1Q05722 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC14.35□□□□□ -0.11
Col9a1Q05722 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Gm22323-201ENSMUST00000103832 109 ntBASIC14.35□□□□□ -0.11
Col9a1Q05722 Gm12566-201ENSMUST00000121479 359 ntBASIC14.35□□□□□ -0.11
Col9a1Q05722 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC14.35□□□□□ -0.11
Col9a1Q05722 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.35□□□□□ -0.11
Col9a1Q05722 Gm38158-201ENSMUST00000194617 339 ntBASIC14.35□□□□□ -0.11
Col9a1Q05722 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC14.35□□□□□ -0.11
Col9a1Q05722 Gm6649-201ENSMUST00000199743 1165 ntBASIC14.35□□□□□ -0.11
Col9a1Q05722 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC14.35□□□□□ -0.11
Col9a1Q05722 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col9a1Q05722 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm12241-201ENSMUST00000118330 726 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm14381-201ENSMUST00000122105 414 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 Rpa3-201ENSMUST00000012627 670 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm5970-201ENSMUST00000131638 1216 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.34□□□□□ -0.11
Col9a1Q05722 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm3508-201ENSMUST00000186012 792 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm8679-201ENSMUST00000210651 1036 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC14.34□□□□□ -0.11
Col9a1Q05722 AC133598.1-201ENSMUST00000224327 660 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 AC154757.2-201ENSMUST00000228885 743 ntBASIC14.34□□□□□ -0.11
Col9a1Q05722 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col9a1Q05722 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC14.34□□□□□ -0.11
Col9a1Q05722 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col9a1Q05722 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Col9a1Q05722 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col9a1Q05722 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col9a1Q05722 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm12718-202ENSMUST00000156144 660 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm24644-201ENSMUST00000157114 139 ntBASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm25668-201ENSMUST00000157700 129 ntBASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm37008-201ENSMUST00000195712 319 ntBASIC14.33□□□□□ -0.12
Col9a1Q05722 Gm31831-201ENSMUST00000196240 684 ntTSL 3 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 AC129597.1-201ENSMUST00000223046 1234 ntBASIC14.33□□□□□ -0.12
Col9a1Q05722 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Vmn1r192-201ENSMUST00000072632 1067 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.33□□□□□ -0.12
Col9a1Q05722 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col9a1Q05722 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms