Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Col8a1Q00780 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Col8a1Q00780 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col8a1Q00780 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col8a1Q00780 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col8a1Q00780 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC12.52□□□□□ -0.4
Col8a1Q00780 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col8a1Q00780 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col8a1Q00780 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Col8a1Q00780 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Gm8597-201ENSMUST00000191525 1109 ntBASIC12.52□□□□□ -0.41
Col8a1Q00780 Gm37917-201ENSMUST00000194711 392 ntBASIC12.52□□□□□ -0.41
Col8a1Q00780 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Gm15823-201ENSMUST00000064305 670 ntBASIC12.52□□□□□ -0.41
Col8a1Q00780 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC12.52□□□□□ -0.41
Col8a1Q00780 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Col8a1Q00780 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Gm13233-201ENSMUST00000118760 1443 ntBASIC12.52□□□□□ -0.41
Col8a1Q00780 Gm13244-201ENSMUST00000118855 1446 ntBASIC12.52□□□□□ -0.41
Col8a1Q00780 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Col8a1Q00780 Sybu-209ENSMUST00000228639 4113 ntBASIC12.52□□□□□ -0.41
Col8a1Q00780 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC12.51□□□□□ -0.41
Col8a1Q00780 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Col8a1Q00780 Gm9719-201ENSMUST00000162765 543 ntBASIC12.51□□□□□ -0.41
Col8a1Q00780 Gm27892-201ENSMUST00000185017 106 ntBASIC12.51□□□□□ -0.41
Col8a1Q00780 AY702102-202ENSMUST00000194651 1173 ntBASIC12.51□□□□□ -0.41
Col8a1Q00780 Gm42466-201ENSMUST00000202099 1301 ntBASIC12.51□□□□□ -0.41
Col8a1Q00780 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Col8a1Q00780 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Col8a1Q00780 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Col8a1Q00780 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col8a1Q00780 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Gm22189-201ENSMUST00000103822 86 ntBASIC12.5□□□□□ -0.41
Col8a1Q00780 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC12.5□□□□□ -0.41
Col8a1Q00780 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC12.5□□□□□ -0.41
Col8a1Q00780 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC12.5□□□□□ -0.41
Col8a1Q00780 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.5□□□□□ -0.41
Col8a1Q00780 Gm9522-201ENSMUST00000182394 926 ntBASIC12.5□□□□□ -0.41
Col8a1Q00780 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC12.5□□□□□ -0.41
Col8a1Q00780 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.5□□□□□ -0.41
Col8a1Q00780 Gm46209-201ENSMUST00000217912 553 ntBASIC12.5□□□□□ -0.41
Col8a1Q00780 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.5□□□□□ -0.41
Col8a1Q00780 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Col8a1Q00780 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Col8a1Q00780 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Col8a1Q00780 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms