Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Sdc1P18828 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Sdc1P18828 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Sdc1P18828 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Sdc1P18828 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Sdc1P18828 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Sdc1P18828 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sdc1P18828 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sdc1P18828 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Sdc1P18828 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Gm5639-201ENSMUST00000122305 2403 ntBASIC12.04□□□□□ -0.48
Sdc1P18828 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC12.04□□□□□ -0.48
Sdc1P18828 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Sdc1P18828 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Sdc1P18828 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC12.04□□□□□ -0.48
Sdc1P18828 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 CT009510.1-201ENSMUST00000227972 270 ntBASIC12.04□□□□□ -0.48
Sdc1P18828 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Sdc1P18828 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Sdc1P18828 Gm12626-201ENSMUST00000117339 1983 ntBASIC12.04□□□□□ -0.48
Sdc1P18828 Gm12623-201ENSMUST00000119849 1983 ntBASIC12.04□□□□□ -0.48
Sdc1P18828 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Sdc1P18828 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Sdc1P18828 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sdc1P18828 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Sdc1P18828 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sdc1P18828 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC12.03□□□□□ -0.48
Sdc1P18828 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC12.03□□□□□ -0.48
Sdc1P18828 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
Sdc1P18828 Gm18284-201ENSMUST00000172604 624 ntBASIC12.03□□□□□ -0.48
Sdc1P18828 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Gm7507-201ENSMUST00000183053 1008 ntBASIC12.03□□□□□ -0.48
Sdc1P18828 Arhgef4-208ENSMUST00000211073 171 ntBASIC12.03□□□□□ -0.48
Sdc1P18828 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC12.03□□□□□ -0.48
Sdc1P18828 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC12.03□□□□□ -0.48
Sdc1P18828 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Sdc1P18828 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Sdc1P18828 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Sdc1P18828 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms