Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Cdx1P18111 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Cdx1P18111 Gm43677-201ENSMUST00000198098 2378 ntBASIC11.9□□□□□ -0.51
Cdx1P18111 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx1P18111 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx1P18111 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx1P18111 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx1P18111 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx1P18111 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx1P18111 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Cdx1P18111 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC11.89□□□□□ -0.51
Cdx1P18111 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 AC153794.1-201ENSMUST00000169148 126 ntBASIC11.89□□□□□ -0.51
Cdx1P18111 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC11.89□□□□□ -0.51
Cdx1P18111 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC11.89□□□□□ -0.51
Cdx1P18111 Rps4l-201ENSMUST00000071745 943 ntBASIC11.89□□□□□ -0.51
Cdx1P18111 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Cdx1P18111 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Cdx1P18111 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Cdx1P18111 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Cdx1P18111 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC11.88□□□□□ -0.51
Cdx1P18111 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Cdx1P18111 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Gm7935-201ENSMUST00000100555 1278 ntBASIC11.88□□□□□ -0.51
Cdx1P18111 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC11.88□□□□□ -0.51
Cdx1P18111 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC11.88□□□□□ -0.51
Cdx1P18111 Gm12644-201ENSMUST00000119935 606 ntBASIC11.88□□□□□ -0.51
Cdx1P18111 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC11.88□□□□□ -0.51
Cdx1P18111 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC11.88□□□□□ -0.51
Cdx1P18111 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC11.88□□□□□ -0.51
Cdx1P18111 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC11.88□□□□□ -0.51
Cdx1P18111 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Gm43056-201ENSMUST00000197865 2791 ntBASIC11.88□□□□□ -0.51
Cdx1P18111 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms