Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Gm4913-201ENSMUST00000117075 1290 ntBASIC16.01■□□□□ 0.15
Chmp6P0C0A3 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Gm45747-201ENSMUST00000212203 999 ntBASIC16.01■□□□□ 0.15
Chmp6P0C0A3 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chmp6P0C0A3 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC16■□□□□ 0.15
Chmp6P0C0A3 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Chmp6P0C0A3 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Chmp6P0C0A3 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Chmp6P0C0A3 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16■□□□□ 0.15
Chmp6P0C0A3 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Gm4995-201ENSMUST00000117247 432 ntBASIC16■□□□□ 0.15
Chmp6P0C0A3 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16■□□□□ 0.15
Chmp6P0C0A3 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC16■□□□□ 0.15
Chmp6P0C0A3 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Chmp6P0C0A3 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC16■□□□□ 0.15
Chmp6P0C0A3 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 AC225888.1-201ENSMUST00000227184 728 ntBASIC16■□□□□ 0.15
Chmp6P0C0A3 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16■□□□□ 0.15
Chmp6P0C0A3 Gm10154-201ENSMUST00000084445 354 ntBASIC16■□□□□ 0.15
Chmp6P0C0A3 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16■□□□□ 0.15
Chmp6P0C0A3 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chmp6P0C0A3 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Gm27301-201ENSMUST00000184012 127 ntBASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chmp6P0C0A3 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Gm14822-201ENSMUST00000122247 291 ntBASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.15
Chmp6P0C0A3 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms