Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Hoxd3P09027 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hoxd3P09027 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.58
Hoxd3P09027 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.58
Hoxd3P09027 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC11.46□□□□□ -0.58
Hoxd3P09027 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hoxd3P09027 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 CT025626.1-201ENSMUST00000223735 1455 ntBASIC11.45□□□□□ -0.58
Hoxd3P09027 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Gm25287-201ENSMUST00000103846 110 ntBASIC11.45□□□□□ -0.58
Hoxd3P09027 Gm22918-201ENSMUST00000103855 110 ntBASIC11.45□□□□□ -0.58
Hoxd3P09027 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Gm13616-201ENSMUST00000120600 222 ntBASIC11.45□□□□□ -0.58
Hoxd3P09027 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC11.45□□□□□ -0.58
Hoxd3P09027 D530018E20Rik-201ENSMUST00000205107 958 ntBASIC11.45□□□□□ -0.58
Hoxd3P09027 AC166341.4-201ENSMUST00000220625 123 ntBASIC11.45□□□□□ -0.58
Hoxd3P09027 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC11.45□□□□□ -0.58
Hoxd3P09027 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hoxd3P09027 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Gm15483-201ENSMUST00000120338 456 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Gm24158-201ENSMUST00000175263 71 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Gm7774-201ENSMUST00000200064 533 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Gm44872-201ENSMUST00000207864 420 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Gm45925-201ENSMUST00000218882 744 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 AC139382.1-201ENSMUST00000221402 498 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 AC131187.1-201ENSMUST00000224567 809 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Olfr1212-201ENSMUST00000055895 936 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Mxra8os-201ENSMUST00000097740 687 ntBASIC11.44□□□□□ -0.58
Hoxd3P09027 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Hoxd3P09027 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Hoxd3P09027 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms