Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 AC153872.1-201ENSMUST00000199539 128 ntBASIC17.37■□□□□ 0.37
Col3a1P08121 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC17.37■□□□□ 0.37
Col3a1P08121 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC17.37■□□□□ 0.37
Col3a1P08121 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Col3a1P08121 Gm6912-201ENSMUST00000117218 544 ntBASIC17.37■□□□□ 0.37
Col3a1P08121 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC17.37■□□□□ 0.37
Col3a1P08121 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC17.37■□□□□ 0.37
Col3a1P08121 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC17.37■□□□□ 0.37
Col3a1P08121 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC17.37■□□□□ 0.37
Col3a1P08121 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Col3a1P08121 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.36■□□□□ 0.37
Col3a1P08121 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC17.36■□□□□ 0.37
Col3a1P08121 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Col3a1P08121 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.36■□□□□ 0.37
Col3a1P08121 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC17.36■□□□□ 0.37
Col3a1P08121 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Col3a1P08121 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC17.36■□□□□ 0.37
Col3a1P08121 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Gm44608-201ENSMUST00000206827 855 ntBASIC17.36■□□□□ 0.37
Col3a1P08121 Gm9797-201ENSMUST00000052902 613 ntBASIC17.36■□□□□ 0.37
Col3a1P08121 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Col3a1P08121 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col3a1P08121 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.35■□□□□ 0.37
Col3a1P08121 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC17.35■□□□□ 0.37
Col3a1P08121 Gm10766-202ENSMUST00000194123 606 ntBASIC17.35■□□□□ 0.37
Col3a1P08121 Gm45668-201ENSMUST00000211271 493 ntBASIC17.35■□□□□ 0.37
Col3a1P08121 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col3a1P08121 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col3a1P08121 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Col3a1P08121 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.34■□□□□ 0.37
Col3a1P08121 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col3a1P08121 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC17.34■□□□□ 0.37
Col3a1P08121 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col3a1P08121 Gm28631-201ENSMUST00000190740 334 ntBASIC17.34■□□□□ 0.37
Col3a1P08121 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.34■□□□□ 0.37
Col3a1P08121 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col3a1P08121 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col3a1P08121 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col3a1P08121 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col3a1P08121 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Col3a1P08121 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col3a1P08121 Gm15393-201ENSMUST00000120499 219 ntBASIC17.33■□□□□ 0.37
Col3a1P08121 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC17.33■□□□□ 0.37
Col3a1P08121 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col3a1P08121 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC17.33■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms