Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Gm17837-201ENSMUST00000186435 985 ntBASIC15.85■□□□□ 0.13
Vti1aO89116 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.85■□□□□ 0.13
Vti1aO89116 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Vti1aO89116 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Vti1aO89116 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Vti1aO89116 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Vti1aO89116 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Vti1aO89116 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
Vti1aO89116 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Vti1aO89116 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Vti1aO89116 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Vti1aO89116 Gm45293-201ENSMUST00000209754 1812 ntBASIC15.84■□□□□ 0.13
Vti1aO89116 Gm13517-201ENSMUST00000120782 1495 ntBASIC15.84■□□□□ 0.13
Vti1aO89116 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC15.84■□□□□ 0.13
Vti1aO89116 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Gm8410-201ENSMUST00000117225 605 ntBASIC15.84■□□□□ 0.13
Vti1aO89116 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC15.84■□□□□ 0.13
Vti1aO89116 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Vti1aO89116 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Vti1aO89116 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Vti1aO89116 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Vti1aO89116 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
Vti1aO89116 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Vti1aO89116 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Vti1aO89116 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Vti1aO89116 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Vti1aO89116 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
Vti1aO89116 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC15.83■□□□□ 0.12
Vti1aO89116 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC15.83■□□□□ 0.12
Vti1aO89116 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.83■□□□□ 0.12
Vti1aO89116 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Vti1aO89116 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Vti1aO89116 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Vti1aO89116 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.83■□□□□ 0.12
Vti1aO89116 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
Vti1aO89116 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Vti1aO89116 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.82■□□□□ 0.12
Vti1aO89116 Gm6415-201ENSMUST00000118488 348 ntBASIC15.82■□□□□ 0.12
Vti1aO89116 Gm12428-201ENSMUST00000119844 727 ntBASIC15.82■□□□□ 0.12
Vti1aO89116 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC15.82■□□□□ 0.12
Vti1aO89116 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC15.82■□□□□ 0.12
Vti1aO89116 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC15.82■□□□□ 0.12
Vti1aO89116 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC15.82■□□□□ 0.12
Vti1aO89116 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Vti1aO89116 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
Vti1aO89116 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Vti1aO89116 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Vti1aO89116 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Vti1aO89116 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Vti1aO89116 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Vti1aO89116 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Vti1aO89116 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Vti1aO89116 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms