Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 AC154412.1-201ENSMUST00000226540 2786 ntBASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Sybu-209ENSMUST00000228639 4113 ntBASIC15.83■□□□□ 0.12
Cpsf3Q9QXK7 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Gm9726-201ENSMUST00000180321 678 ntBASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Olfr286-202ENSMUST00000205305 969 ntBASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Cpsf3Q9QXK7 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 AC174678.1-201ENSMUST00000228007 2749 ntBASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Cpsf3Q9QXK7 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC15.8■□□□□ 0.12
Cpsf3Q9QXK7 Gm45098-201ENSMUST00000207179 657 ntBASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms