Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Gm4535-201ENSMUST00000182274 558 ntBASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Gm17971-201ENSMUST00000190239 806 ntBASIC14.57□□□□□ -0.08
Lima1Q9ERG0 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Gm10355-201ENSMUST00000097146 517 ntBASIC14.57□□□□□ -0.08
Lima1Q9ERG0 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Lima1Q9ERG0 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Gm24589-201ENSMUST00000116692 94 ntBASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Umpk-ps-201ENSMUST00000211897 827 ntBASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Lima1Q9ERG0 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Gm27646-201ENSMUST00000183989 110 ntBASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Gm6296-201ENSMUST00000222599 943 ntBASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Lima1Q9ERG0 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.54□□□□□ -0.08
Lima1Q9ERG0 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.54□□□□□ -0.08
Lima1Q9ERG0 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms