Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm4986-201ENSMUST00000119731 549 ntBASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Gm18027-201ENSMUST00000218947 619 ntBASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Mir6927-201ENSMUST00000184494 71 ntBASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Gm34767-201ENSMUST00000191813 1062 ntBASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Scn4aQ9ER60 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Gm14028-201ENSMUST00000117434 479 ntBASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Scn4aQ9ER60 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Snord83b-201ENSMUST00000104546 94 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm7857-201ENSMUST00000117957 358 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm12217-201ENSMUST00000118858 696 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm6222-202ENSMUST00000182143 629 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm27772-201ENSMUST00000184900 187 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm18556-201ENSMUST00000219748 1031 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm12012-201ENSMUST00000118857 1066 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm13297-201ENSMUST00000120205 934 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Gm25261-201ENSMUST00000157416 134 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 n-R5s195-201ENSMUST00000082891 119 ntBASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Scn4aQ9ER60 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Gm42929-201ENSMUST00000198374 1286 ntBASIC19.66■□□□□ 0.74
Scn4aQ9ER60 AC153974.2-201ENSMUST00000218577 1025 ntBASIC19.66■□□□□ 0.74
Scn4aQ9ER60 AC154680.1-201ENSMUST00000224376 859 ntBASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Prodh2-201ENSMUST00000058280 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Scn4aQ9ER60 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms