Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cpsf1Q9EPU4 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 AC140375.2-201ENSMUST00000225283 584 ntBASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Gm44645-201ENSMUST00000205492 1653 ntBASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Gm45667-201ENSMUST00000210380 1316 ntBASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cpsf1Q9EPU4 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Gm16215-201ENSMUST00000161990 637 ntBASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Gm44608-201ENSMUST00000206827 855 ntBASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cpsf1Q9EPU4 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Cpsf1Q9EPU4 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Cd63-ps-201ENSMUST00000145417 875 ntBASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Gm6916-202ENSMUST00000205523 195 ntBASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 AC238811.1-201ENSMUST00000225302 441 ntBASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Gm45630-201ENSMUST00000210243 1911 ntBASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cpsf1Q9EPU4 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Gtpbp10-211ENSMUST00000198799 648 ntBASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Gm44855-201ENSMUST00000205725 362 ntBASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 AC124732.1-201ENSMUST00000221551 910 ntBASIC20.1■□□□□ 0.81
Cpsf1Q9EPU4 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf1Q9EPU4 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf1Q9EPU4 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
Cpsf1Q9EPU4 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf1Q9EPU4 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf1Q9EPU4 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf1Q9EPU4 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cpsf1Q9EPU4 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms